BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002F10SP1|AL425006
(856 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1612 1596 0.0
>3x_Contig1612
Length = 15608
Score = 1596 bits (790), Expect = 0.0
Identities = 829/854 (97%), Gaps = 2/854 (0%)
Strand = Plus / Minus
Query: 1 gcagtcattgggtcttcggtgatagcattggtattamtgtttgctgggacatttgatgat 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6148 gcagtcattgggtcttcggtgatagcattggtattactgtttgctgggacatttgatgat 6089
Query: 61 ggagtggaattagcgtcatttactggggaagaagaattggtgttgccactggtagtagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6088 ggagtggaattagcgtcatttactggggaagaagaattggtgttgccactggtagtagta 6029
Query: 121 gtagamttgccattggacggatcggatttaggtcttttamtcttttcamcacttttctcc 180
||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 6028 gtagacttgccattggacggatcggatttaggtcttttactcttttcaccacttttctcc 5969
Query: 181 ggtttcctcttcttgctggatttcamaggamgtgtttmcccctcttggtagamttcatcc 240
||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||||
Sbjct: 5968 ggtttcctcttcttgctggatttcacaggacgtgtttccccctcttggtagacttcatcc 5909
Query: 241 ggtaagtmatgcactttcacatamttgatgattaaagaatamgtttcagggtcctcatag 300
||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 5908 ggtaagtcatgcactttcacatacttgatgattaaagaatacgtttcagggtcctcatag 5849
Query: 301 tcgggtaatgagcgaaamaaattgaaaaawtcttgamatggaatgtgtatatmaattttt 360
||||||||||||||| | ||||||||||| |||||| ||||||||||||||| |||||||
Sbjct: 5848 tcgggtaatgagcgacacaaattgaaaaattcttgacatggaatgtgtatatcaattttt 5789
Query: 361 ttactctcttctgtgttgatgtcaagtccaataaamatcgtggctatgtgaacttgatta 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 5788 ttactctcttctgtgttgatgtcaagtccaataaacatcgtggctatgtgaacttgatta 5729
Query: 421 gagtttttggaggcttcatcgtctttgtttgcatcagttatttttgtaaamtttttcaat 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5728 gagtttttggaggcttcatcgtctttgtttgcatcagttatttttgtaaactttttcaat 5669
Query: 481 acaccttctgtmttatgtgtaccgtagttgttcatgatctctttatattmatmmtcatta 540
||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 5668 acaccttctgtcttatgtgtaccgtagttgttcatgatctctttatattcatcctcatta 5609
Query: 541 ttgtatatatagctggactcgtatggttcaataaatggatgcgccagawtgattcctggt 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5608 ttgtatatatagctggactcgtatggttcaataaatggatgcgccagattgattcctggt 5549
Query: 601 aaaacttctagtttttggaccaacaatctgagcttactttcaacgaatccactccatttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5548 aaaacttctagtttttggaccaacaatctgagcttactttcaacgaatccactccatttc 5489
Query: 661 aagtgttgttcgtcggaaccctttgttgagaccataaccgtta-gtagyaatttatactt 719
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 5488 aagtgttgttcgtcggaaccctttgttgagaccataaccgttaggtag-aatttatactt 5430
Query: 720 gaagaagaaatcgtgtttcttgaacaaatcttcccatgatagttcattagagaaaatctt 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5429 gaagaagaaatcgtgtttcttgaacaaatcttcccatgatagttcattagagaaaatctt 5370
Query: 780 ttgtgtgacctctacacctctttgtaattcagataagatcactttcttagttgactcact 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5369 ttgtgtgacctctacacctctttgtaattcagataagatcactttcttagttgactcact 5310
Query: 840 gatgttgtgggtag 853
||||||||||||||
Sbjct: 5309 gatgttgtgggtag 5296
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5501
Number of Sequences: 1807
Number of extensions: 5501
Number of successful extensions: 116
Number of sequences better than 1.0e-20: 1
length of query: 856
length of database: 10,358,551
effective HSP length: 16
effective length of query: 840
effective length of database: 10,329,639
effective search space: 8676896760
effective search space used: 8676896760
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.5 bits)